reworking the logic to copy files instead of folders for services and adding more logic gaurds to prevent us from attempting to run directories or copy over files if they match

root/etc/cont-init.d/99-custom-files

@@ -0,0 +1,45 @@
+#!/usr/bin/with-contenv bash
+
+# Directories
+SCRIPTS_DIR="/config/custom-init-scripts"
+SERVICES_DIR="/config/custom-services.d"
+
+# Make sure custom directories exist and have files in them
+if ([ -e "${SCRIPTS_DIR}" ] && \
+   [ -n "$(/bin/ls -A ${SCRIPTS_DIR} 2>/dev/null)" ]) || \
+   ([ -e "${SERVICES_DIR}" ] && \
+   [ -n "$(/bin/ls -A ${SERVICES_DIR} 2>/dev/null)" ]); then
+    if [ -n "$(/bin/ls -A ${SCRIPTS_DIR} 2>/dev/null)" ]; then
+      echo "[custom-init] files found in ${SCRIPTS_DIR} executing"
+      for SCRIPT in ${SCRIPTS_DIR}/*; do
+        NAME="$(basename "${SCRIPT}")"
+        if [ -f "${SCRIPT}" ]; then
+          echo "[custom-init] ${NAME}: executing..."
+          /bin/bash ${SCRIPT}
+          echo "[custom-init] ${NAME}: exited $?"
+        elif [ ! -f "${SCRIPT}" ]; then
+          echo "[custom-init] ${NAME}: is not a file"
+        fi
+      done
+    fi
+    if [ -n "$(/bin/ls -A ${SERVICES_DIR} 2>/dev/null)" ]; then
+      echo "[custom-init] service files found in ${SERVICES_DIR} copying"
+      for SERVICE in ${SERVICES_DIR}/*; do
+        NAME="$(basename "${SERVICE}")"
+        if ! $(cmp -s ${SERVICE} /etc/services.d/${NAME}/run) && \
+           [ -f "${SERVICE}" ]; then
+          echo "[custom-init] ${NAME}: new file detected copying..."
+          mkdir -p /etc/services.d/${NAME}/
+          cp ${SERVICE} /etc/services.d/${NAME}/run
+          chmod +x /etc/services.d/${NAME}/run
+          echo "[custom-init] ${NAME}: copied"
+        elif [ ! -f "${SERVICE}" ]; then
+          echo "[custom-init] ${NAME}: is not a file"
+        else
+          echo "[custom-init] ${NAME}: is up to date"
+        fi
+      done
+    fi
+else
+    echo "[custom-init] no custom files found exiting..."
+fi

root/etc/cont-init.d/99-custom-scripts

@@ -1,30 +0,0 @@
-#!/usr/bin/with-contenv bash
-
-# Make sure custom script directory exists and has files in it
-SCRIPTS_DIR="/config/custom-init-scripts"
-if [ -e "${SCRIPTS_DIR}" ] && \
-   [ -n "$(/bin/ls -A ${SCRIPTS_DIR} 2>/dev/null)" ]; then
-    echo "[custom-init] files found in ${SCRIPTS_DIR} executing"
-    for SCRIPT in ${SCRIPTS_DIR}/*; do
-        echo "[custom-init] ${SCRIPT}: executing..."
-        /bin/bash ${SCRIPT}
-        echo "[custom-init] ${SCRIPT}: exited $?"
-    done
-else
-    echo "[custom-init] no custom scripts found exiting..."
-fi
-
-# Make sure custom services directory exists and has files in it
-SERVICES_DIR="/config/custom-services.d"
-if [ -e "${SERVICES_DIR}" ] && \
-   [ -n "$(/bin/ls -A ${SERVICES_DIR} 2>/dev/null)" ]; then
-    echo "[custom-init] service folders found in ${SERVICES_DIR} executing"
-    for SERVICE in ${SERVICES_DIR}/*; do
-        echo "[custom-init] ${SERVICE}: copying..."
-        cp -r ${SERVICE} /etc/services.d/
-        chmod +x /etc/services.d/${SERVICE}/run
-        echo "[custom-init] ${SERVICE}: done"
-    done
-else
-    echo "[custom-init] no custom services found exiting..."
-fi